PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RQE9Z
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 665aa    MW: 73022.1 Da    PI: 10.2408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RQE9ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-103889246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                     + W t+E++ll+ av+++G ++W+t+a +++       +  t+ +c  ++++
      Aradu.RQE9Z 38 QVWGTWEELLLASAVNRHGFKDWDTVAMEVQsrtsvpnLQATALHCEQKFHD 89
                     68*****************************888888888888888888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-43272IPR009057Homeodomain-like
SuperFamilySSF466892.24E-53373IPR009057Homeodomain-like
PfamPF002497.2E-93889IPR001005SANT/Myb domain
CDDcd001672.14E-54073No hitNo description
SMARTSM002971.8E-11329423IPR001487Bromodomain
SuperFamilySSF473704.19E-13334421IPR001487Bromodomain
CDDcd043695.19E-10339418No hitNo description
PfamPF004391.3E-6359408IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.4E-11360440IPR001487Bromodomain
PROSITE profilePS500149.145361404IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MVKPSSFSYH MENHQNNNPT RDPDLAEEEK KKRNQHPQVW GTWEELLLAS AVNRHGFKDW  60
DTVAMEVQSR TSVPNLQATA LHCEQKFHDL NLRFADQLND AVPPLLQNGA ASVDSSDHVP  120
WLDELRKLRV AELRREVQQS DVSILSLQLK VKKLEEEREK ENDGKVDEKA DLAVCGEARP  180
GNDGTGGERE VPEPTGSEPE IRRLEESTTN TDKLLPTTGD ESDRENQSVN ESNSTGSRFE  240
GGKTGAGDGD GKTGVGAVPV HPGPKEPDPV GRKRRPIGEE SNNGSYDTEF QPASRSRQVR  300
RGRQRMTRRR KEASGGSGGG EVAPESDETM VKSEPLIGLL EMIKAHEHSS LFERRLESQH  360
VDLETIQSRL HKGHYSSSTN SFFRDLLLLF TNATVFFPRD SLESMAAQQL RRLVMAEMKN  420
QGQAQSDPSP QKTDSNPPNA PQAKPESLLS KHKASAPILV CRKRSSMSSK PSPATFGQKG  480
DQPITDKKEK PSSDAKPPMK PSSSETDEDE PPKAKEKPVT GARSLRRSNK NLSSNSNSGN  540
KKLPTNSTIK AGTLVTKAVE AAKPDKSKAE GGQDKKKNAA ADFLKRIKRN APGDNKGKER  600
ASRHNNGGGG GSGDKRNKNV VENSKRSVGR PPKKTAESNT ASAKRGRENS ASASKDKRPK  660
KRSKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1656664KRPKKRSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932235.10.0PREDICTED: serine/arginine repetitive matrix protein 1
TrEMBLV7BVJ80.0V7BVJ8_PHAVU; Uncharacterized protein
STRINGGLYMA08G15870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-67DNA-binding bromodomain-containing protein